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Pregnant women and newborns are vulnerable during infectious disease pandemics because of specificities in their immune systems, maternal-fetal transmission, non-deferrable healthcare needs and risks of adverse perinatal outcomes due to stress and social deprivation. The research question below aims to investigate the effects of the COVID-19 pandemic on maternal and newborn health.

  • Title: Effects of the COVID-19 pandemic on maternal and newborn health
  • Author(s): Marianne Philibert; Jennifer Zeitling; David Chichell-Ruiz; Javier González-Galindo;
  • Researcher(s): Francisco Estupiñán-Romero; Enrique Bernal-Delgado;
  • Research question: Effects of the COVID-19 pandemic on maternal and newborn health 
  • Cohort: All births as defined within each data source locally between 2017-01-01 until today. All births with a gestational age of 22 weeks or more or when gestational age is missing with a birthweight of 500 g or more.
  • Countries involved: Austria, Belgium, Croatia, Cyprus, Czechia, Denmark, Estonia, Finland, France, Germany, Iceland, Ireland, Italy, Latvia, Lithuania, Luxembourg,  Malta, Netherlands, Norway, Poland, Portugal, Romania, Scotland, Slovakia, Slovenia, Spain, Sweden, Switzerland, UK
  • Countries that will be involved: Romania and Hungary (not joining PHIRI protocol)
  • Open source material published on Zenodo: Common data model of Use Case C

 

PHIRI DOCKER APPLICATION

In 13 data hubs, the PHIRI App Docker is already deployed and tested (December 2022). However, there are some other countries or institutions that have also downloaded and deployed the Docker outside of the PHIRI project.

 

ZENODO DOWNLOADS 

TOTAL: 1630 views; 213 downloads (December 2022) - https://zenodo.org/record/6377134

13 published releases of PHIRI on ZENODO, some with multiple versions:

  • PHIRI APP - WP7 - PHIRI Federated Research Infrastructure (FRI) - D7.1 Small-scale prototype of PHIRI federated infrastructure (8 versions published), currently at v.2.2.4
  • PHIRI - WP7 - Pilot Common Data Model (1 version published), currently at v.1.0.0
  • PHIRI - WP7 - Pilot scripts for local analyses (RMarkdown) (1 version published), currently at v.1.0.0
  • PHIRI - WP7 - Pilot outputs from the local analyses (interactive reports) (1 version published), currently at v.1.0.0
  • PHIRI - WP6 - Use Case A Common Data Model (2 versions published), currently at v.3.0.0
  • PHIRI - WP6 - Use Case A scripts for local analyses (R Markdown) (4 versions published), currently at v.1.1.2
  • PHIRI - WP6 - Use Case B Common Data Model (2 versions published), currently at v.2.0.0
  • PHIRI - WP6 - Use Case B scripts for local analyses (R Markdown) (2 versions published), currently at v.4.0.1
  • PHIRI - WP6 - Use Case B outputs from the local analyses (interactive reports) (2 versions published), currently at v.1.0.1
  • PHIRI - WP6 - Use Case C Common Data Model (2 versions published), currently at v.2.0.0
  • PHIRI - WP6 - Use Case C scripts for local analyses (R Markdown) (2 versions published), currently at v.2.0.1
  • PHIRI - WP6 - Use Case D Common Data Model (2 versions published), currently at v.2.0.0
  • PHIRI - WP6 - Use Case D scripts for local analyses (R Markdown) (3 versions published), currently at v.1.1.1

 

Access virtual labs

 
 


Select one public Binder service and open Jupyter lab or Rstudio. Instructions are provided in the README.tm file.