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Healthcare systems all across Europe have had to reorganize services and reallocate resources to provide attention to COVID-19 patients. Because of the rampant increase of cases that required intensive attention or the inherent risk of COVID-19 nosocomial infection, all countries have been forced to cancel or postpone non-urgent care (e.g., elective surgery). The research question below aims to investigate potential delays in treatment for women diagnosed of breast cancer, as a consequence of the COVID-19 crisis.

  • Title: Delayed care in cancer patients
  • Author(s): Francisco Estupiñán-Romero; Javier González-Galindo; Natalia Martínez-Lizaga; Enrique Bernal-Delgado;
  • Research question: Has there been any increase in surgical and/or co-adjuvant (i.e. radiotherapy, chemotherapy, inmunotherapy) treatments delay in elegible women diagnosed of breast cancer, as a consequence of the COVID-19 crisis? 
  • Cohort: Women, 18 years old or older, with a first diagnosis of breast cancer between 2017-01-01 until today.
  • Countries involved: Belgium, Italy (Marche), Latvia, Spain (IACS), Wales (UK)
  • Countries that will be involved: Romania, Croatia
  • Open source material published on Zenodo:

 

PHIRI DOCKER APPLICATION

In 13 data hubs, the PHIRI App Docker is already deployed and tested (December 2022). However, there are some other countries or institutions that have also downloaded and deployed the Docker outside of the PHIRI project.

 

ZENODO DOWNLOADS 

TOTAL: 1630 views; 213 downloads (December 2022) - https://zenodo.org/record/6377134

13 published releases of PHIRI on ZENODO, some with multiple versions:

  • PHIRI APP - WP7 - PHIRI Federated Research Infrastructure (FRI) - D7.1 Small-scale prototype of PHIRI federated infrastructure (8 versions published), currently at v.2.2.4
  • PHIRI - WP7 - Pilot Common Data Model (1 version published), currently at v.1.0.0
  • PHIRI - WP7 - Pilot scripts for local analyses (RMarkdown) (1 version published), currently at v.1.0.0
  • PHIRI - WP7 - Pilot outputs from the local analyses (interactive reports) (1 version published), currently at v.1.0.0
  • PHIRI - WP6 - Use Case A Common Data Model (2 versions published), currently at v.3.0.0
  • PHIRI - WP6 - Use Case A scripts for local analyses (R Markdown) (4 versions published), currently at v.1.1.2
  • PHIRI - WP6 - Use Case B Common Data Model (2 versions published), currently at v.2.0.0
  • PHIRI - WP6 - Use Case B scripts for local analyses (R Markdown) (2 versions published), currently at v.4.0.1
  • PHIRI - WP6 - Use Case B outputs from the local analyses (interactive reports) (2 versions published), currently at v.1.0.1
  • PHIRI - WP6 - Use Case C Common Data Model (2 versions published), currently at v.2.0.0
  • PHIRI - WP6 - Use Case C scripts for local analyses (R Markdown) (2 versions published), currently at v.2.0.1
  • PHIRI - WP6 - Use Case D Common Data Model (2 versions published), currently at v.2.0.0
  • PHIRI - WP6 - Use Case D scripts for local analyses (R Markdown) (3 versions published), currently at v.1.1.1

 

Access virtual labs

 
 


Select one public Binder service and open Jupyter lab or Rstudio. Instructions are provided in the README.tm file.